![]() ![]() ![]() Using version of Java in /usr: /usr/bin/java ![]() bin/apollo: line 212: unalias: java: not found Maybe it is fine to run it from where it was downloaded, but I like to follow a clean approach, so I moved the downloaded file to a temporary location /tmp in case the installer generates a load of temporary files when it runs.Ĭouldn't find JavaPath line in apollo.cfg file, trying to guess path to java. Since you have a JVM installed, download Apollo_unix.sh But better to move it to /tmp just in case we need it. It might be a good idea to move /usr/bin/bioinfo to somewhere like /tmp. Looks like you missed (or didn't understand the significance) the notes in Linux instructions and the FAQ. Post your output if something doesn't work as expected.īelow is how I managed to install Apollo. There may be a few things we can tidy up with JDK, but for now it appears you have managed to get a working one. I think you made more effort than you needed to Don't worry, we learn by making mistakes and come out more confident in the process.Īlright, I'll step you through it bit by bit, so let's focus on one thing at a time.
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